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Spying on Molecular Action with Spins

The Han lab pushes the frontier of magnetic resonance to discover new chemistry principles in water and through control over the shaping and ordering of dynamic water. We use advanced magnetic resonance manipulation and control over the spatial organization of electron and nuclear spin clusters located on biomolecular surface, soft materials or nanomaterials to uncover their structure, the design rules for molecular recognition, and the surface structuring and dynamics of hydration water.

The development effort requires multiple research tools in the realm of physical chemistry broadly speaking. They include instrument development to achieve hyperpolarization and quantum resonance sensing, the design of precisely tuned electron and nuclear spin clusters, spin physic theory and simulations, and the dynamics and thermodynamics of solvation science to control biomolecular activity and directed assembly.

The Han lab is pushing the frontier of electron and nuclear spin magnetic resonance instrumentation and concepts in dynamic nuclear polarization (DNP) amplified nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR). We are motivated by the power of “Seeing is Believing”. Visualizing molecular interactions and materials interfaces, previously “invisible”, can fundamentally transform our ability to discover solutions, and almost as importantly, ask new questions.

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Areas Of Research

Research in the Han Lab builds and employs state-of-the-art tools in magnetic resonance spectroscopy to advance our understanding in different subject areas, ranging from quantum sensing, solvation science, biophysics to neurodegenerative diseases.

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Design spin cluster for NMR signal amplification and quantum resonance sensing

To reveal “invisible” NMR signal of surfaces, active sites, and functional species in catalysis, molecular recognition and quantum materials using out of the box tools.

Water directed protein assembly for shape control and templated self-replication

To understand, control and engineer protein aggregation pathways, protein surface activity to protein liquid-liquid phase separation.

Water as a shape-shifting and active biological building block

To reveal long-standing questions on the structure and dynamics of water on proteins, membranes to catalyst support surfaces.

On the left is a box with two graphs side by side on the bottom, the left one showing a shorter "hill" than the one on the right. Both graphs on the left show EPR signal as a function of field. Above each one are two alpha-helix strands represented by ovals, the left red and the right orange, each ending in a Gd spin label represented by a purple circle. The distance between the two strands is longer for the one on the right than for the one on the left. To the right of this box with figures is a figure up top showing a similar "hill" except in blue for laser on and black for laser off, and below it is a buildup curve. There is an arrow pointing from the blue hill figure down to the buildup curve figure (Linewidth in Gauss vs time) that reads "Extract Change in Linewidth that scales with Gd(III) spin distance". The box on the left points to the laser on/off chart on the right with an arrow labeled "Rapid Scan TiGGER"
Field-domain rapid-scan EPR at 240 GHz for studies of protein functional dynamics at room temperature
B. D. Price, A. Sojka, S. Maity, I. M. Chavez, M. Starck, M. Z. Wilson, and M. S. Sherwin J. Magn. Reson., 366 (2024), 107744.
https://doi.org/10.1016/j.jmr.2024.107744. PMID: 39096714. PMCID: PMC12459749.

We present field-domain rapid-scan (RS) electron paramagnetic resonance (EPR) at 8.6 T and 240 GHz. To enable this technique, we upgraded a homebuilt EPR spectrometer with an FPGA-enabled digitizer and real-time processing software. The software leverages the Hilbert transform to recover the in-phase (𝐼) and quadrature (𝑄) channels, and therefore the raw absorptive and dispersive signals, 𝜒′ and 𝜒′′, from their combined magnitude (√𝐼2+𝑄2). Averaging a magnitude is simpler than real-time coherent averaging and has the added benefit of permitting long-timescale signal averaging (up to at least 2.5 × 106 scans) because it eliminates the effects of sourcereceiver phase drift. Our rapid-scan (RS) EPR provides a signal-to-noise ratio that is approximately twice that of continuous wave (CW) EPR under the same experimental conditions, after scaling by the square root of acquisition time. We apply our RS EPR as an extension of the recently reported time-resolved Gd-Gd EPR (TiGGER) [Maity et al., 2023], which is able to monitor inter-residue distance changes during the photocycle of a photoresponsive protein through changes in the Gd-Gd dipolar couplings. RS, opposed to CW, returns field-swept spectra as a function of time with 10 ms time resolution, and thus, adds a second dimension to the static field transients recorded by TiGGER. We were able to use RS TiGGER to track time-dependent and temperature-dependent kinetics of AsLOV2, a light-activated phototropin domain found in oats. The results presented here combine the benefits of RS EPR with the improved spectral resolution and sensitivity of Gd chelates at high magnetic fields. In the future, field-domain RS EPR at high magnetic fields may enable studies of other real-time kinetic processes with time resolutions that are otherwise difficult to access in the solution state.

On the left is a chromophore radical chemical structure labeled "PDI" in a blue oval highlight, with green lighting hitting two electron spins on it. On the right is a BDPA molecular structure in a red circular highlight with one electron spin. An arrow going from the left to the right structure labeled "ESP" is shown. A cycle arrow with NOVEL and REVERSE NOVEL is also shown on the right, with the Reverse NOVEL side including two blacked out spins. There is a wave pattern labeled "uW" for "microwave" coming out of the BDPA side.
Coherent Control over Nuclear Hyperpolarization Using an Optically Initializable Chromophore-Radical System
H. M. Le, J. S. Straub, Q. Stern, A. Equbal, Y. Qiu, M. D. Krzyaniak, M. R. Wasielewski, and S. Han J. Am. Chem. Soc., 147 (39) (2025), 35313–35322.

Chromophore radicals (CR) are emerging as important components for molecular quantum information science (QIS), especially in the context of quantum sensing. Here, we demonstrate that the optically hyperpolarized electrons in a 1,6,7,12-tetrakis(4-tert-butylphenoxy)-perylene-3,4,9,10-bis(dicarboximide) (tpPDI) covalently linked to a partially deuterated 1,3-bis(diphenylene)-d16-2-phenylallyl radical (BDPA-d16) can be coherently manipulated via pulsed dynamic nuclear polarization (DNP) methods to transfer polarization to nuclear spins and back. Under light illumination at 85 K, electron hyperpolarization in BDPA is enhanced 2.1- to 2.4-fold over thermal polarization and lasts for more than 100 ms. By applying nuclear orientation via electron spin-locking (NOVEL) DNP, this optically amplified electron hyperpolarization was successfully transferred to a 1H nuclear spin within the CR system and efficiently returned to the electron spin for readout via reverse-NOVEL. The NOVEL transfer efficiency of 65% amounts to a 688-fold nuclear spin hyperpolarization of the target nuclear spin, considering the 2.1-fold electron spin hyperpolarization. This reversible coherent manipulation of hyperpolarization transfer highlights the utility of CR systems to initialize and read out nuclear spin states in a disordered matrix at moderate cryogenic temperatures. Coupled with CRs’ environmental compatibility, tunability, and precise state initialization, these results highlight the promising role of nuclear spins in CRs for QIS applications, including quantum sensing and memory.

Structure-specific Mini-Prion Model for Alzheimer’s Disease Tau Fibrils
V. Vijayan, G. E. Merz, K. Tsay, A. P. Longhini, S. Lobo, A. Quddus, K. L. S. Nakagawa, M. P. Vigers, A. A. Melo, E. Tse, J.-E. Shea, M. S. Shell, K. S. Kosik, D. R. Southworth, S. Han bioRxiv, (2025).

A critical discovery of the past decade is that tau protein fibrils adopt disease-specific hallmark structures in each tauopathy. The faithful generation of synthetic fibrils adopting hallmark structures that can serve as targets for developing diagnostic and/or therapeutic strategies remains a grand challenge. We report on a rational design of synthetic fibrils built of a short peptide that adopts a critical structural motif in tauopathy fibrils found in Alzheimer’s Disease (AD) and Chronic Traumatic Encephalopathy (CTE). They serve as minimal prions with exquisite seeding competency, in vitro and in tau biosensor cells, for recruiting tau constructs ten times larger its size en route to AD or CTE fibril structures. We demonstrate that the generation of AD and CTE-like fibril structures is dramatically catalyzed in the presence of mini-AD prions and further influenced by salt composition in solution. Double Electron-Electron Resonance studies confirmed the preservation of AD-like folds across multi-generational seeding. Fibrils formed with the full AD/CTE-like core show strong seeding competency, with their templating effect dominating over the choice of salt composition that tunes the initial selection of AD- and CTE-like fibril populations. The mini-AD prions serve as a potent catalyst with templating capabilities that offer a novel strategy to design pathological tau fibril models.

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Interested in joining the Han research group? Reach us at han-ofc@northwestern.edu

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The projects underway involve aspects of diverse disciplines!

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